PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.267170.1
Common NameCsa_3G415100, LOC101215402
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 236aa    MW: 26097.6 Da    PI: 6.5299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.267170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.3e-1179126454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ +++L
  Cucsa.267170.1  79 SKACREKLRRDRLNDKFLELGSILDPG---RPPKTDKAAILVDAVRMVNQL 126
                     6789**********************8...89***************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.28775126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1375146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-879126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-1379149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-881132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-883131No hitNo description
CDDcd146860.00274141173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVSPENPNWL FDYGLIEDIP VPDGNFPVTS SSFSWPIQPF NGSHDSGVEI DGSLADLDGH  60
LESGSKKRVR SDSCSASSSK ACREKLRRDR LNDKFLELGS ILDPGRPPKT DKAAILVDAV  120
RMVNQLRGET EKLKESNSSL QEKIKELKAE KNELRDEKQR LKADKERLEQ QVKSMPAQQP  180
GFLPPPIPTF PAQGQAPGNK LFPFIGYHPS VAMWQFMPPA AVDTSQDHVL RPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818261e-127LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132581e-127LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151962.21e-172PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-105ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0A0L7N81e-172A0A0A0L7N8_CUCSA; Uncharacterized protein
STRINGVIT_19s0014g05100.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16023486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-91bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]